STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR14530.1Putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (176 aa)    
Predicted Functional Partners:
EAR14531.1
Hypothetical protein.
 
 
 0.914
EAR16521.1
Putative RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.766
EAR15746.1
RNA polymerase sigma-70 factor, ECF subfamily protein.
  
     0.763
EAR14965.1
Hypothetical protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.759
EAR15744.1
RNA polymerase sigma-70 factor, ECF subfamily protein.
  
     0.757
EAR15193.2
Sigma-24 (FecI-like) protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.752
EAR14482.1
RNA polymerase sigma-70 factor, ECF subfamily protein.
  
     0.749
EAR16143.1
RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.715
EAR14529.1
Copper/Zinc superoxide dismutase.
     
 0.630
EAR17241.1
RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.556
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.