STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR14589.1Putative alpha-rhamnosidase. (729 aa)    
Predicted Functional Partners:
EAR14585.1
Rhamnosidase A.
 
     0.705
EAR14345.1
Glycogen phosphorylase.
  
 
 0.704
EAR14584.1
Hypothetical protein.
 
     0.648
EAR14598.1
Putative rhamnosidase.
 
     0.640
EAR14590.1
Putative outer membrane protein, probably involved in nutrient binding.
 
     0.493
EAR14591.1
Putative outer membrane protein, probably involved in nutrient binding.
 
     0.486
EAR14587.1
Nodulation protein L.
       0.471
EAR17253.2
Hypothetical protein.
  
     0.459
EAR14045.1
Hypothetical protein.
  
     0.436
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.