STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR14095.1Hypothetical protein. (255 aa)    
Predicted Functional Partners:
ribH
Riboflavin synthase subunit beta; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
  
    0.814
EAR16698.1
Hypothetical protein.
  
    0.810
EAR14089.1
Hypothetical protein.
 
     0.755
EAR17023.1
Hypothetical protein.
  
     0.754
EAR15380.1
Hypothetical protein.
  
     0.753
EAR14409.1
Cationic outer membrane protein OmpH.
  
  
 0.746
EAR15292.1
Hypothetical protein.
 
   
 0.731
EAR14299.1
Hypothetical protein.
  
    0.727
EAR15503.1
Hypothetical protein.
 
    0.722
EAR15033.1
tonB protein, putative.
 
     0.718
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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