STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR14237.1Aspartate aminotransferase. (399 aa)    
Predicted Functional Partners:
EAR14370.1
Prephenate dehydratase.
 
 
 0.946
EAR17100.1
Glutamate synthase (ferredoxin).
    
 0.946
mdh
Putative malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
 0.918
EAR15137.1
Putative isocitrate dehydrogenase; Belongs to the monomeric-type IDH family.
 
 
 
  0.918
EAR14293.1
Putative aspartate aminotransferase.
  
  
 
0.917
EAR16969.1
Argininosuccinate synthase.
  
 0.917
EAR14288.1
Delta-1-pyrroline-5-carboxylate dehydrogenase.
   
 0.914
EAR16783.1
Cys/Met metabolism PLP-dependent enzyme superfamily protein.
  
 
 0.912
EAR15403.1
Cystathionine beta-lyase.
  
 
 0.912
EAR16796.1
4-hydroxyphenylpyruvate dioxygenase.
   
 
 0.911
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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