Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAR14410.1Outer membrane protein OmpH, putative. (275 aa)    
Predicted Functional Partners:
EAR17154.1
Hypothetical protein.
  
   0.924
EAR15951.1
Hypothetical protein.
  
 
   0.921
EAR14411.1
Putative outer membrane protein.
 
  
 0.892
EAR16545.1
TPR domain protein.
  
 
   0.873
EAR14409.1
Cationic outer membrane protein OmpH.
 
     0.820
EAR14413.1
Inorganic polyphosphate/ATP-NAD kinase.
 
 
   0.781
EAR14297.1
porT protein.
 
     0.778
EAR15849.1
Hypothetical protein.
  
     0.745
EAR15980.1
Hypothetical protein.
  
     0.741
EAR15911.1
OmpA family protein.
 
 
 0.731
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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