Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAR15911.1OmpA family protein. (623 aa)    
Predicted Functional Partners:
EAR15912.1
Hypothetical protein.
 
     0.896
EAR14163.1
Hypothetical protein.
  
     0.751
EAR14169.1
Hypothetical protein.
  
     0.749
EAR14752.1
Hypothetical protein.
  
 
   0.740
EAR14410.1
Outer membrane protein OmpH, putative.
 
 
 0.731
EAR15913.1
Probable aggregation factor core protein MAFp3, isoform C.
 
 
   0.713
EAR14751.1
Hypothetical protein.
  
 
   0.697
EAR14164.1
VCBS protein.
  
 
   0.695
EAR15951.1
Hypothetical protein.
 
     0.677
EAR16812.1
Hypothetical protein.
  
     0.670
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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