Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAR15912.1Hypothetical protein. (331 aa)    
Predicted Functional Partners:
EAR15911.1
OmpA family protein.
 
     0.896
EAR15913.1
Probable aggregation factor core protein MAFp3, isoform C.
 
     0.824
EAR14168.1
OmpA family protein.
  
     0.773
EAR16581.1
OmpA family protein.
  
     0.767
EAR15492.1
OmpA family protein.
  
     0.760
EAR14268.1
Hypothetical protein.
  
     0.718
EAR16545.1
TPR domain protein.
  
     0.713
EAR14266.1
Hypothetical protein.
  
     0.712
EAR14285.1
Hypothetical protein.
  
     0.705
EAR17153.1
Lipoprotein, putative.
 
     0.679
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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