Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAR15913.1Probable aggregation factor core protein MAFp3, isoform C. (1562 aa)    
Predicted Functional Partners:
EAR15912.1
Hypothetical protein.
 
     0.824
EAR14164.1
VCBS protein.
  
     0.738
EAR15911.1
OmpA family protein.
 
 
   0.713
EAR14752.1
Hypothetical protein.
  
     0.668
EAR15646.1
Hypothetical protein.
  
    0.632
EAR14266.1
Hypothetical protein.
  
   0.613
EAR14067.1
Outer membrane autotransporter barrel domain protein.
  
     0.603
EAR14265.1
Hypothetical protein.
  
    0.561
EAR16601.1
Hypothetical protein.
  
     0.561
EAR15493.1
Hypothetical protein.
  
     0.556
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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