Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EAR15918.1Two-component system response regulator protein. (242 aa)    
Predicted Functional Partners:
EAR15919.1
ATP-binding region, ATPase-like protein.
 
 
 0.961
EAR16387.1
Signal transduction ATPase, FimS family protein.
 
 
 0.832
EAR14636.1
Putative two-component system sensor protein histidine kinase.
 
   0.820
EAR14542.1
Hypothetical protein.
 
   0.819
EAR15920.1
Hypothetical protein.
 
     0.672
EAR15917.1
Putative hexapeptide repeat protein.
       0.610
EAR15916.1
Transcriptional regulator, AraC family protein.
       0.457
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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