Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAR15925.1nifU related protein. (300 aa)    
Predicted Functional Partners:
EAR16503.1
Succinate dehydrogenase.
  
 
 0.668
EAR16410.1
Scaffold protein for iron-sulfur cluster assembly; Belongs to the HesB/IscA family.
 
 
 0.667
EAR15926.1
Hypothetical protein.
       0.607
EAR16915.1
Hypothetical protein.
  
     0.583
EAR16917.1
Ferredoxin.
  
 
 0.576
lipA
Lipoyl synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
  
 0.552
EAR15924.1
Hypothetical protein.
       0.549
EAR16770.1
Hypothetical protein.
  
     0.549
EAR15002.1
Aminotransferase, class V.
 
 
 0.546
EAR14346.1
Hypothetical protein.
  
     0.544
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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