STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR16092.1Possible tonB-dependent receptor precursor. (705 aa)    
Predicted Functional Partners:
EAR14451.1
TonB-dependent receptor, putative.
  
     0.673
EAR16093.1
Putative transcriptional regulator.
       0.658
EAR16094.1
Hydrogenase expression/formation protein; HypC.
       0.620
EAR16091.1
Hydrogenase expression/formation protein HypE.
       0.598
EAR16095.1
CODH nickel-insertion accessory protein.
       0.588
EAR16089.1
Transcriptional regulatory protein; HypF.
       0.471
EAR16090.1
Putative [NiFe] hydrogenase expression/formation protein.
       0.471
EAR15931.1
Putative outer membrane transport/efflux protein.
  
     0.465
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.