Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAR16108.1Hypothetical protein. (54 aa)    
Predicted Functional Partners:
EAR16102.1
Putative cytochrome C3-like [NiFe] hydrogenase large subunit.
  
 
 0.977
EAR16107.1
Hypothetical protein.
       0.778
EAR16105.1
Hypothetical protein.
       0.729
EAR16106.1
Hypothetical protein.
       0.727
EAR15970.1
Molybdopterin oxidoredutase membrane subunit.
  
  
 0.663
EAR16097.1
Putative [NiFe] hydrogenase-specific C-terminal protease.
  
  
 0.533
EAR16103.1
Hypothetical protein.
       0.482
EAR16104.1
Hypothetical protein.
       0.482
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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