STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAXylose isomerase; Belongs to the xylose isomerase family. (441 aa)    
Predicted Functional Partners:
EAR16135.1
Putative xylulose kinase; Belongs to the FGGY kinase family.
 
 
 0.996
EAR16760.1
Fructokinase.
    
 0.905
EAR17146.1
SacC; Belongs to the glycosyl hydrolase 32 family.
     
 0.905
EAR16134.1
Alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family.
       0.528
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.459
EAR16133.1
2-deoxy-D-gluconate 3-dehydrogenase.
     
 0.421
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.