Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAR16162.1Hypothetical protein. (156 aa)    
Predicted Functional Partners:
EAR16164.1
Glutamate synthase; Belongs to the glutamate synthase family.
 
     0.806
EAR16163.1
Hypothetical protein.
       0.777
EAR16158.1
Hypothetical protein.
 
     0.749
EAR16161.1
Uncharacterized conserved membrane protein, probable transporter.
 
     0.724
EAR16160.1
Hypothetical protein.
       0.568
EAR16208.1
Transcriptional regulator, ArsR family protein.
  
     0.528
EAR16207.1
Probable copper-transporting ATPase.
  
     0.516
EAR16159.1
Hypothetical protein.
       0.514
EAR14568.1
Uncharacterized conserved secreted or membrane protein.
 
     0.492
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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