STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR16341.1Lycopene cyclase. (401 aa)    
Predicted Functional Partners:
EAR15016.1
Beta carotene hydroxylase.
  
 0.951
EAR15018.1
Phytoene dehydrogenase.
 
 
 0.928
EAR17000.1
hydroxymethylglutaryl-CoA reductase, degradative; Belongs to the HMG-CoA reductase family.
  
  
 0.656
EAR16883.1
Outer membrane efflux protein.
  
     0.518
EAR17235.1
arginyl-tRNA synthetase.
  
     0.515
EAR15019.1
Transcriptional regulator, MerR family protein.
  
   
 0.498
EAR16340.1
Putative TonB-dependent outer membrane receptor protein.
       0.493
EAR14032.1
Hydrolase of MutT (Nudix) family protein.
   
  
 0.438
EAR14162.1
Putative isopentenyl-diphosphate delta-isomerase.
   
  
 0.438
EAR15861.1
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
 
 0.427
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.