STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR16387.1Signal transduction ATPase, FimS family protein. (644 aa)    
Predicted Functional Partners:
EAR16386.1
LytTr DNA-binding domain family protein.
 
 
 0.956
EAR15918.1
Two-component system response regulator protein.
 
 
 0.832
EAR14424.1
Two-component system response regulator protein.
 
 
 0.831
EAR14637.1
Putative response regulator.
 
 
 0.824
EAR14538.1
Two-component system response regulator.
 
 
 0.819
EAR15817.1
Transcriptional regulator, LytR/AlgR family protein.
 
 
 0.807
EAR14144.1
Heat shock protein 90; Molecular chaperone. Has ATPase activity.
  
 0.604
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.596
EAR15789.1
Response Regulator Receiver Signal Transduction Histidine Kinase.
 
 
 0.574
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.557
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.