STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR16621.1Hypothetical protein. (410 aa)    
Predicted Functional Partners:
EAR16620.1
CBS domain pair protein.
 
     0.958
EAR16617.1
Pyrroloquinoline quinone biosynthesis protein PqqB.
 
     0.641
EAR17242.1
Hypothetical protein.
  
     0.605
EAR16616.1
Fructosamine kinase.
       0.528
EAR16618.1
Carboxy-terminal processing protease precursor; Belongs to the peptidase S41A family.
       0.528
rnpA
Hypothetical protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
       0.528
EAR15748.1
Hypothetical protein.
 
     0.498
EAR16661.1
Hypothetical protein.
  
     0.487
EAR16742.1
phenylalanyl-tRNA synthetase alpha subunit.
  
     0.468
EAR16351.1
Hypothetical protein.
  
     0.414
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.