STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR16726.1Thrombospondin type 3 repeat:OmpA/MotB. (446 aa)    
Predicted Functional Partners:
EAR15310.1
Outer membrane protein OmpA.
  
  
 
0.610
EAR16725.1
Hypothetical protein.
       0.609
EAR14702.1
Hypothetical protein.
 
 
   0.591
EAR14420.1
Hypothetical protein.
  
     0.529
kbl
2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.
       0.505
EAR16728.1
ATP-dependent helicase.
       0.503
EAR15150.1
LysM-repeat protein.
 
 
 
 0.488
EAR15199.1
Pyrimidine regulatory protein PyrR.
 
      0.487
EAR14410.1
Outer membrane protein OmpH, putative.
 
 
 0.486
EAR15548.1
Putative flagellar motor protein MotB.
  
 
0.474
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.