STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR16752.1BatA (Bacteroides aerotolerance operon). (333 aa)    
Predicted Functional Partners:
EAR16750.1
Aerotolerance-related exported protein.
     0.992
EAR16749.1
Aerotolerance-related exported protein.
  
 0.976
EAR16754.1
Hypothetical protein.
 
  
 0.962
EAR16753.1
Hypothetical protein.
 
   
 0.930
EAR16748.1
BatE, TRP domain containing protein.
 
   
 0.917
EAR16755.1
Magnesium chelatase, subunit I.
 
  
 0.891
EAR16751.1
Hypothetical protein.
 
   
0.873
EAR16081.1
Hypothetical protein.
 
  
 0.696
EAR17124.1
Hypothetical protein.
 
  
 0.640
EAR15668.1
Magnesium chelatase, subunit ChlI family protein.
  
 
 0.535
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.