Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAR16814.1Probable tonB-dependent receptor. (691 aa)    
Predicted Functional Partners:
EAR15640.1
Hypothetical protein.
  
     0.486
EAR16815.1
Hypothetical protein.
       0.479
EAR14068.1
Hypothetical protein.
 
     0.468
EAR14799.1
Putative anti-sigma factor.
 
 
 0.462
EAR16851.1
Hypothetical protein.
  
     0.437
EAR15605.1
Hypothetical protein.
  
     0.432
EAR15310.1
Outer membrane protein OmpA.
  
     0.417
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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