Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
EAR16839.1Predicted glycogen debranching enzyme. (804 aa)    
Predicted Functional Partners:
recX
Putative transcriptional regulatory protein; Modulates RecA activity; Belongs to the RecX family.
       0.773
EAR15609.1
Hypothetical protein.
  
     0.685
EAR14345.1
Glycogen phosphorylase.
  
 
 0.670
EAR14932.1
Fibronectin, type III.
  
     0.667
EAR15140.1
Hypothetical protein.
  
     0.637
EAR14404.1
Isoamylase protein-like protein.
 
 
 0.627
EAR15139.1
Putative isopenicillin N epimerase.
  
     0.611
EAR15141.1
Hypothetical protein.
  
     0.604
glgB
Glycogen branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 
 0.579
EAR15781.1
Putative outer membrane protein probably involved in nutrient binding.
  
     0.513
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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