STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR16988.1Hypothetical protein. (325 aa)    
Predicted Functional Partners:
EAR16987.1
Hypothetical protein.
 
     0.923
EAR16989.1
Hypothetical protein.
       0.588
EAR16075.1
16S rRNA-processing protein.
  
     0.564
EAR16576.1
Hypothetical protein.
  
     0.517
EAR14380.1
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
  
 0.509
EAR15977.1
Hypothetical protein.
  
     0.499
EAR14064.1
Hypothetical protein.
  
     0.495
EAR15277.1
Putative outer membrane protein, probably involved in nutrient binding.
  
   
 0.488
EAR16990.1
Transmembrane protein, putative.
 
     0.467
EAR17137.1
L-ribulose-5-phosphate 4-epimerase.
  
  
 0.423
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.