Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAR17029.1Lipoprotein, putative. (438 aa)    
Predicted Functional Partners:
EAR17032.1
Hypothetical protein.
 
 
 
 0.927
EAR17030.1
Hypothetical protein.
 
   
 0.879
EAR17031.1
Hypothetical protein.
 
   
 0.833
EAR15951.1
Hypothetical protein.
 
   
 0.767
EAR14297.1
porT protein.
 
   
 0.756
EAR14347.1
Hypothetical protein.
  
   
 0.748
EAR16845.1
Hypothetical protein.
  
   
 0.726
EAR14285.1
Hypothetical protein.
  
     0.718
EAR16515.1
Putative gliding motility protein.
  
   
 0.713
EAR17154.1
Hypothetical protein.
  
   
 0.683
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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