STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR17239.1Putative transmembrane sensor. (303 aa)    
Predicted Functional Partners:
EAR17238.1
Putative outer membrane protein probably involved in nutrient binding.
 
    0.952
EAR14799.1
Putative anti-sigma factor.
  
  
 
0.926
EAR17241.1
RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.852
EAR14734.1
Putative TonB-dependent receptor.
 
 
 0.618
EAR14988.1
Hypothetical protein.
  
     0.610
EAR17242.1
Hypothetical protein.
 
     0.560
EAR17240.1
Hypothetical protein.
       0.473
EAR17237.1
Hypothetical protein.
       0.427
EAR15845.1
Hypothetical protein.
  
     0.406
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.