STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR14791.1Aminotransferase, class IV. (285 aa)    
Predicted Functional Partners:
EAR16138.1
Histidinol-phosphate aminotransferase.
   
 
 0.914
EAR16708.1
Mur ligase domain protein/alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
 0.914
EAR15522.1
Histidinol-phosphate aminotransferase.
   
 
 0.914
hisC
Putative histidine biosynthesis-related aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.914
ddl
D-alanylalanine synthetase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
   
 
 0.910
EAR14237.1
Aspartate aminotransferase.
  
 
 0.906
EAR14288.1
Delta-1-pyrroline-5-carboxylate dehydrogenase.
   
 0.906
EAR14293.1
Putative aspartate aminotransferase.
  
 
 0.906
EAR16796.1
4-hydroxyphenylpyruvate dioxygenase.
   
 
 0.901
EAR15020.1
D-amino acid dehydrogenase.
     
 0.901
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.