STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR14799.1Putative anti-sigma factor. (327 aa)    
Predicted Functional Partners:
EAR17239.1
Putative transmembrane sensor.
  
  
 
0.926
EAR14798.1
Putative RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
   0.864
EAR14800.1
Putative outer membrane protein.
 
    0.776
EAR14801.1
Putative outer membrane protein, probably involved in nutrient binding.
 
     0.614
EAR14734.1
Putative TonB-dependent receptor.
  
 
 0.546
EAR15263.1
Two-component system sensor histidine kinase/response.
 
   
 0.541
EAR16814.1
Probable tonB-dependent receptor.
 
 
 0.443
EAR15439.1
Putative outer membrane protein.
 
  
 0.424
EAR15484.1
Very long chain acyl-CoA dehydrogenase-related protein.
  
     0.414
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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