STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR14865.1Putative outer membrane protein, probably involved in nutrient binding. (1006 aa)    
Predicted Functional Partners:
EAR14864.1
Putative outer membrane protein, probably involved in nutrient binding.
 
 
   0.956
EAR14801.1
Putative outer membrane protein, probably involved in nutrient binding.
  
     0.711
EAR14590.1
Putative outer membrane protein, probably involved in nutrient binding.
 
   0.651
EAR16334.1
Putative TonB-linked outer membrane protein.
  
     0.576
EAR14866.1
Transcriptional regulator, AraC family protein.
 
     0.538
EAR15276.1
Putative outer membrane protein, probably involved in nutrient binding.
 
 
   0.522
EAR15489.1
Hypothetical protein.
  
     0.508
EAR14823.1
Hypothetical protein.
  
     0.461
EAR14411.1
Putative outer membrane protein.
  
     0.436
EAR16445.1
Hypothetical protein.
 
 
 
 0.432
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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