STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR15341.1Putative capsular polysaccharide biosynthesis protein. (663 aa)    
Predicted Functional Partners:
EAR15340.1
Putative aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.990
EAR15342.1
Polysaccharide export protein, BexD/CtrA/VexA family protein.
  
  
 0.947
EAR15343.1
Tyrosine-protein kinase.
 
  
 0.944
EAR15321.1
Putative undecaprenyl-phosphate glycosyl-1-phosphate transferase.
  
 0.943
EAR16011.1
Pigmentation and extracellular proteinase regulator; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.906
EAR14648.1
Tyrosine-protein kinase ptk.
 
  
 0.823
EAR15500.1
Polysaccharide biosynthesis protein; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.771
EAR17063.1
Transferase hexapeptide repeat protein.
 
  
 0.637
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.595
gmd-2
GDP-D-mannose dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.595
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.