Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAR15779.1Putative oxidoreductase. (326 aa)    
Predicted Functional Partners:
EAR17253.2
Hypothetical protein.
 
      0.897
EAR15780.1
propionyl-CoA carboxylase, beta subunit, putative.
       0.551
EAR15778.1
Hypothetical protein.
       0.524
EAR16065.1
Hypothetical protein.
 
     0.443
EAR15834.1
Oxidoreductase, Gfo/Idh/MocA family protein.
  
     0.436
EAR16026.1
NADH-dependent dyhydrogenase.
  
     0.430
EAR15777.1
Putative ATP-binding component of ABC transporter.
       0.402
Your Current Organism:
Robiginitalea biformata
NCBI taxonomy Id: 313596
Other names: R. biformata HTCC2501, Robiginitalea biformata HTCC2501, Robiginitalea biformata str. HTCC2501, Robiginitalea biformata strain HTCC2501
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