STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSP_10740Pentapeptide repeat family protein; Nsp10740; ORF_ID:nsp10740. (211 aa)    
Predicted Functional Partners:
NSP_49090
Putative thylakoid membrane protein, contains 8 pentapeptide repeats, sll0274-like protein; Nsp49090; ORF_ID:nsp49090.
  
     0.772
NSP_36950
Putative lumenal protein, contains 8 pentapeptide repeats, sll0577-like protein; Nsp36950; ORF_ID:nsp36950.
  
     0.737
NSP_37660
Hypothetical protein; Nsp37660; ORF_ID:nsp37660.
    
  0.643
NSP_10750
Hypothetical protein; Nsp10750; ORF_ID:nsp10750.
 
     0.550
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
    
   0.533
NSP_33140
Putative lumenal protein, contains 8 pentapeptide repeats, sll0577-like protein; Nsp33140; ORF_ID:nsp33140.
  
     0.520
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
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