STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSP_13080Hypothetical protein; Nsp13080; ORF_ID:nsp13080. (218 aa)    
Predicted Functional Partners:
NSP_18920
Hypothetical protein; Nsp18920; ORF_ID:nsp18920.
 
     0.796
NSP_17470
Hypothetical protein, contains HAS barrel docking domain and DUF87 domain; Nsp17470; ORF_ID:nsp17470.
 
     0.791
NSP_30960
Exonuclease SbcC; Nsp30960; ORF_ID:nsp30960.
 
     0.776
sbcD
Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
 
     0.775
NSP_52700
Transglutaminase-like protein; Nsp52700; ORF_ID:nsp52700.
  
     0.770
NSP_50630
Hypothetical protein; Nsp50630; ORF_ID:nsp50630.
  
     0.736
NSP_24060
Phycobilisome core-membrane linker polypeptide; Nsp24060; ORF_ID:nsp24060; Belongs to the phycobilisome linker protein family.
  
     0.721
NSP_19080
Hypothetical protein; Nsp19080; ORF_ID:nsp19080.
  
     0.646
NSP_10330
Hypothetical protein; Nsp10330; ORF_ID:nsp10330.
  
     0.644
NSP_7740
TPR repeat; Nsp7740; ORF_ID:nsp7740.
  
     0.642
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.