STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gvpAGas vesicle protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure. (71 aa)    
Predicted Functional Partners:
NSP_15410
Gas vesicle protein gvpN; Nsp15410; ORF_ID:nsp15410.
 
   
 0.913
NSP_15420
Gas vesicle protein; Nsp15420; ORF_ID:nsp15420.
 
   
 0.813
NSP_15430
Gas vesicle protein; Nsp15430; ORF_ID:nsp15430.
 
   
 0.810
NSP_15440
Gas vesicle protein; Nsp15440; ORF_ID:nsp15440.
 
   
 0.809
NSP_15450
Gas vesicle G; Nsp15450; ORF_ID:nsp15450.
 
   
 0.785
NSP_15400
GvpC; Nsp15400; ORF_ID:nsp15400.
     
 0.769
NSP_15470
Hypothetical protein; Nsp15470; ORF_ID:nsp15470.
      
 0.613
nifW
Nitrogenase stabilizing/protective protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
      
 0.613
rpoB
DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
      
 0.613
gvpA-2
Gas vesicle protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
 
    
0.499
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
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