STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSP_17330Cold-shock DNA-binding domain protein; Nsp17330; ORF_ID:nsp17330. (209 aa)    
Predicted Functional Partners:
rpmE
LSU ribosomal protein L31p; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.
   
 
 0.991
NSP_10570
SSU ribosomal protein S12p (S23e); Nsp10570; ORF_ID:nsp10570.
   
 
 0.989
rpsU
SSU ribosomal protein S21p; Nsp19290; ORF_ID:nsp19290; Belongs to the bacterial ribosomal protein bS21 family.
  
 
 0.989
rpsU-2
SSU ribosomal protein S21p; Nsp26630; ORF_ID:nsp26630; Belongs to the bacterial ribosomal protein bS21 family.
  
 
 0.989
rpsO
SSU ribosomal protein S15p (S13e); Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
 
 0.988
rpsE
SSU ribosomal protein S5p (S2e); Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
   
 
 0.988
rpmA
LSU ribosomal protein L27p; Nsp16350; ORF_ID:nsp16350; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.987
rpsP
SSU ribosomal protein S16p; Nsp8200; ORF_ID:nsp8200; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.987
rpmJ
LSU ribosomal protein L36p; Nsp43620; ORF_ID:nsp43620; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.986
rplO
LSU ribosomal protein L15p (L27Ae); Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
 
 0.986
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
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