STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSP_17670Deoxyhypusine synthase; Nsp17670; ORF_ID:nsp17670; Belongs to the deoxyhypusine synthase family. (391 aa)    
Predicted Functional Partners:
NSP_47220
Translation elongation factor P; Nsp47220; ORF_ID:nsp47220.
   
 0.994
NSP_17660
Hypothetical protein; Nsp17660; ORF_ID:nsp17660.
       0.490
NSP_16880
Sorbitol dehydrogenase; Nsp16880; ORF_ID:nsp16880.
  
     0.456
NSP_42150
Malonyl CoA-acyl carrier protein transacylase; Nsp42150; ORF_ID:nsp42150.
  
 
 0.453
NSP_43880
N-acetylmuramoyl-L-alanine amidase; Nsp43880; ORF_ID:nsp43880.
  
     0.446
rplF
LSU ribosomal protein L6p (L9e); This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
   0.442
NSP_49610
Agmatinase; Nsp49610; ORF_ID:nsp49610; Belongs to the arginase family.
 
   
 0.437
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
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