STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSP_1820ABC transporter, ATP-binding protein; Nsp1820; ORF_ID:nsp1820. (449 aa)    
Predicted Functional Partners:
NSP_1830
O-antigen export system permease protein RfbD; Nsp1830; ORF_ID:nsp1830.
 
 0.997
NSP_13730
O-antigen export system, permease protein; Nsp13730; ORF_ID:nsp13730.
 
 0.993
NSP_23330
O-antigen export system, permease protein; Nsp23330; ORF_ID:nsp23330.
 
 0.993
NSP_1810
Guanylate kinase; Nsp1810; ORF_ID:nsp1810.
 
  
  0.829
NSP_34470
Hypothetical protein; Nsp34470; ORF_ID:nsp34470.
  
  
 0.694
NSP_47400
Capsule polysaccharide export protein; Nsp47400; ORF_ID:nsp47400.
  
  
 0.694
NSP_23320
ABC transporter ATP binding subunit; Nsp23320; ORF_ID:nsp23320.
  
  
 
0.662
NSP_13810
ABC transporter ATP-binding protein; Nsp13810; ORF_ID:nsp13810.
  
  
 
0.629
NSP_38470
Competence protein F-like, phosphoribosyltransferase domain; Nsp38470; ORF_ID:nsp38470.
   
    0.604
NSP_1800
Hypothetical protein; Nsp1800; ORF_ID:nsp1800.
 
  
 0.566
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.