STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cysSCysteinyl-tRNA synthetase; Nsp19600; ORF_ID:nsp19600; Belongs to the class-I aminoacyl-tRNA synthetase family. (477 aa)    
Predicted Functional Partners:
NSP_40570
Serine acetyltransferase; Nsp40570; ORF_ID:nsp40570.
 
 
 0.979
NSP_42050
Serine acetyltransferase; Nsp42050; ORF_ID:nsp42050.
 
 
 0.969
NSP_41330
Cysteine synthase; Nsp41330; ORF_ID:nsp41330; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
 0.929
NSP_9000
Cysteine synthase; Nsp9000; ORF_ID:nsp9000; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
 0.923
mrnC
Ribonuclease III family protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.
  
  
 0.878
NSP_11330
Uncharacterized protein; Nsp11330; ORF_ID:nsp11330.
  
    0.837
NSP_11580
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.818
serS
Seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
 
 
 0.770
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
 
 
  
 0.745
NSP_14900
Cysteine synthase B; Nsp14900; ORF_ID:nsp14900.
  
 0.733
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
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