STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSP_28140Hypothetical protein; Nsp28140; ORF_ID:nsp28140. (607 aa)    
Predicted Functional Partners:
mutS
DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
  
 0.997
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 0.987
NSP_20
DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
 0.972
NSP_10410
Hypothetical protein; Nsp10410; ORF_ID:nsp10410.
  
 0.888
NSP_28160
Type III restriction enzyme, res subunit; Nsp28160; ORF_ID:nsp28160.
 
  
 0.885
NSP_3660
ATP-dependent DNA helicase RecQ; Nsp3660; ORF_ID:nsp3660.
   
 
 0.845
NSP_42890
ATP-dependent DNA helicase RecQ; Nsp42890; ORF_ID:nsp42890.
   
 
 0.838
NSP_28130
Cysteine desulfurase; Nsp28130; ORF_ID:nsp28130.
 
     0.807
NSP_28260
Hypothetical protein; Nsp28260; ORF_ID:nsp28260.
 
     0.778
NSP_28270
Hypothetical protein; Nsp28270; ORF_ID:nsp28270.
 
     0.772
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
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