STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSP_29170Hypothetical protein; Nsp29170; ORF_ID:nsp29170. (38 aa)    
Predicted Functional Partners:
NSP_29140
Type I restriction-modification system, specificity subunit S; Nsp29140; ORF_ID:nsp29140.
  
 
 0.912
NSP_12670
Type I restriction-modification system, restriction subunit R; Nsp12670; ORF_ID:nsp12670.
  
 
 0.888
NSP_20250
Type I restriction-modification system, restriction subunit R; Nsp20250; ORF_ID:nsp20250.
  
 
 0.888
NSP_12700
Type I restriction-modification system, specificity subunit S; Nsp12700; ORF_ID:nsp12700.
  
 
 0.861
NSP_20300
Type I restriction-modification system, specificity subunit S; Nsp20300; ORF_ID:nsp20300.
  
 
 0.861
NSP_29130
Type I restriction-modification system, restriction subunit R; Nsp29130; ORF_ID:nsp29130.
  
 
 0.765
NSP_29180
Hypothetical protein; Nsp29180; ORF_ID:nsp29180.
       0.538
uvrB
Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
    
   0.532
NSP_29190
Hypothetical protein; Nsp29190; ORF_ID:nsp29190.
       0.441
NSP_29150
Hypothetical protein; Nsp29150; ORF_ID:nsp29150.
       0.402
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
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