Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NSP_3000VCBS repeat domain protein; Nsp3000; ORF_ID:nsp3000. (612 aa)    
Predicted Functional Partners:
NSP_3010
Hypothetical protein; Nsp3010; ORF_ID:nsp3010.
       0.773
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
     
  0.628
NSP_45080
Outer membrane protein; Nsp45080; ORF_ID:nsp45080.
    
   0.518
NSP_48850
Outer membrane protein; Nsp48850; ORF_ID:nsp48850.
    
   0.518
NSP_7010
Alkaline phosphatase; Nsp7010; ORF_ID:nsp7010.
  
 
  0.470
NSP_37540
Chemotaxis protein MotB, putative; Nsp37540; ORF_ID:nsp37540.
   
 
 0.445
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
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