STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSP_31990Biopolymer transport protein ExbD/TolR; Nsp31990; ORF_ID:nsp31990. (134 aa)    
Predicted Functional Partners:
NSP_32000
Ferric siderophore transport system, biopolymer transport protein ExbB; Nsp32000; ORF_ID:nsp32000.
 
 
 0.997
NSP_36040
Ferric siderophore transport system, biopolymer transport protein ExbB; Nsp36040; ORF_ID:nsp36040.
 
 
 0.989
NSP_18780
Ferric siderophore transport system, periplasmic binding protein TonB; Nsp18780; ORF_ID:nsp18780.
 
 
 0.983
NSP_17210
Hypothetical protein; Nsp17210; ORF_ID:nsp17210.
  
 
 0.953
NSP_19320
Hypothetical protein; Nsp19320; ORF_ID:nsp19320.
  
   0.708
NSP_2710
Ferrichrome-iron receptor; Nsp2710; ORF_ID:nsp2710.
 
  
 0.631
NSP_2610
Hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
     0.616
NSP_11910
TonB-dependent receptor; Nsp11910; ORF_ID:nsp11910; Outer membrane receptor for ferrienterochelin and colicins.
 
  
 0.596
NSP_11140
Hypothetical protein; Nsp11140; ORF_ID:nsp11140.
    
 
 0.595
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
   
 
 0.586
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
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