STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSP_320WD-40 repeat protein; Nsp320; ORF_ID:nsp320. (335 aa)    
Predicted Functional Partners:
NSP_36790
Cleavage and polyadenylation specificity factor, 73 kDa subunit; Nsp36790; ORF_ID:nsp36790.
    
  0.911
NSP_27580
WD-repeat protein; Nsp27580; ORF_ID:nsp27580.
 
     0.909
alaS
Alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.903
NSP_12480
High-affnity carbon uptake protein Hat/HatR; Nsp12480; ORF_ID:nsp12480.
 
      0.899
NSP_11280
WD-repeat protein; Nsp11280; ORF_ID:nsp11280.
 
     0.880
NSP_32950
Protein kinase; Nsp32950; ORF_ID:nsp32950.
 
 
    0.865
NSP_31400
Serine/Threonine protein kinase; Nsp31400; ORF_ID:nsp31400.
 
      0.836
NSP_47070
Glucose-methanol-choline (GMC) oxidoreductase:NAD binding site; Nsp47070; ORF_ID:nsp47070.
    
  0.833
NSP_15860
Serine/threonine kinase; Nsp15860; ORF_ID:nsp15860.
 
      0.831
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
    
  0.823
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
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