Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NSP_320WD-40 repeat protein; Nsp320; ORF_ID:nsp320. (335 aa)    
Predicted Functional Partners:
NSP_27580
WD-repeat protein; Nsp27580; ORF_ID:nsp27580.
 
     0.908
NSP_12480
High-affnity carbon uptake protein Hat/HatR; Nsp12480; ORF_ID:nsp12480.
 
      0.899
NSP_11280
WD-repeat protein; Nsp11280; ORF_ID:nsp11280.
 
     0.880
NSP_32950
Protein kinase; Nsp32950; ORF_ID:nsp32950.
 
 
    0.868
NSP_31400
Serine/Threonine protein kinase; Nsp31400; ORF_ID:nsp31400.
 
      0.836
NSP_15860
Serine/threonine kinase; Nsp15860; ORF_ID:nsp15860.
 
      0.831
alaS
Alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
    
  0.772
NSP_36790
Cleavage and polyadenylation specificity factor, 73 kDa subunit; Nsp36790; ORF_ID:nsp36790.
    
  0.762
NSP_26720
Malonyl CoA-acyl carrier protein transacylase; Nsp26720; ORF_ID:nsp26720.
   
  0.757
NSP_40510
50S ribosomal subunit maturation GTPase RbgA; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
   
  0.749
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
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