STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSP_32020D-alanyl-D-alanine carboxypeptidase; Nsp32020; ORF_ID:nsp32020. (271 aa)    
Predicted Functional Partners:
NSP_52290
Multimodular transpeptidase-transglycosylase; Nsp52290; ORF_ID:nsp52290.
     
 0.798
NSP_32030
Transporter; Nsp32030; ORF_ID:nsp32030.
 
     0.642
NSP_2850
Cell division protein FtsI [Peptidoglycan synthetase]; Nsp2850; ORF_ID:nsp2850.
  
  
 0.613
NSP_46060
Multimodular transpeptidase-transglycosylase; Nsp46060; ORF_ID:nsp46060.
     
 0.597
NSP_770
Multimodular transpeptidase-transglycosylase; Nsp770; ORF_ID:nsp770.
     
 0.597
NSP_31910
Cell division protein FtsI [Peptidoglycan synthetase]; Nsp31910; ORF_ID:nsp31910.
     
 0.553
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
   
 0.483
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.