STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSP_37720Hypothetical protein; Nsp37720; ORF_ID:nsp37720. (211 aa)    
Predicted Functional Partners:
NSP_23530
Prohibitin-like protein; Nsp23530; ORF_ID:nsp23530.
   
  0.876
NSP_34450
Putative stomatin/prohibitin-family membrane protease subunit YbbK; Nsp34450; ORF_ID:nsp34450.
   
  0.876
NSP_43940
Membrane protease subunits, stomatin/prohibitin-like protein; Nsp43940; ORF_ID:nsp43940.
   
  0.876
NSP_44400
Putative stomatin/prohibitin-family membrane protease subunit YbbK; Nsp44400; ORF_ID:nsp44400.
   
  0.876
rpsE
SSU ribosomal protein S5p (S2e); Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
 
 
 0.779
rplO
LSU ribosomal protein L15p (L27Ae); Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
   0.771
NSP_35420
Lycopene cyclase, CruP type; Nsp35420; ORF_ID:nsp35420.
  
     0.768
NSP_50
Hypothetical protein; Nsp50; ORF_ID:nsp50.
 
     0.768
rplM
LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
 
 0.763
NSP_34570
SSU ribosomal protein S1p; Nsp34570; ORF_ID:nsp34570.
 
   0.762
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
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