STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSP_41780Hypothetical protein; Nsp41780; ORF_ID:nsp41780; Belongs to the SOS response-associated peptidase family. (238 aa)    
Predicted Functional Partners:
NSP_41770
Hypothetical protein; Nsp41770; ORF_ID:nsp41770.
       0.773
ycf3
Photosystem I assembly protein Ycf3; Seems to be required for the assembly of the photosystem I complex; Belongs to the Ycf3 family.
       0.727
NSP_41760
Glutathione S-transferase, unnamed subgroup; Nsp41760; ORF_ID:nsp41760; Belongs to the GST superfamily.
       0.522
NSP_26700
Integrase-recombinase protein; Nsp26700; ORF_ID:nsp26700.
   
    0.453
NSP_46500
Phage integrase; Nsp46500; ORF_ID:nsp46500; Belongs to the 'phage' integrase family.
   
    0.453
NSP_4880
Hypothetical protein; Nsp4880; ORF_ID:nsp4880.
   
    0.453
NSP_51890
Hypothetical protein; Nsp51890; ORF_ID:nsp51890.
   
    0.453
NSP_8280
Phage integrase; Nsp8280; ORF_ID:nsp8280.
   
    0.453
gatC
Aspartyl-tRNA(Asn) amidotransferase subunit C Glutamyl-tRNA(Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
       0.408
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
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