STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSP_43340TPR repeat protein; Nsp43340; ORF_ID:nsp43340. (227 aa)    
Predicted Functional Partners:
NSP_44660
WD-40 repeat protein; Nsp44660; ORF_ID:nsp44660.
    
  0.941
NSP_33200
TPR domain protein, putative component of TonB system; Nsp33200; ORF_ID:nsp33200.
 
      0.896
NSP_14390
TPR domain protein, putative component of TonB system; Nsp14390; ORF_ID:nsp14390.
 
      0.885
NSP_52640
Signal transduction histidine kinase; Nsp52640; ORF_ID:nsp52640.
   
 0.845
NSP_3970
Chaperone protein HtpG; Nsp3970; ORF_ID:nsp3970.
   
  0.836
alaS
Alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
    
  0.834
NSP_14990
WD-40 repeat protein; Nsp14990; ORF_ID:nsp14990.
    
  0.827
NSP_15730
Pentapeptide repeat; Nsp15730; ORF_ID:nsp15730.
    
  0.827
NSP_34990
Chemotaxis protein methyltransferase CheR; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
   
 0.780
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.712
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
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