STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSP_43360TPR domain protein, putative component of TonB system; Nsp43360; ORF_ID:nsp43360. (1186 aa)    
Predicted Functional Partners:
NSP_44660
WD-40 repeat protein; Nsp44660; ORF_ID:nsp44660.
   
  0.942
NSP_52640
Signal transduction histidine kinase; Nsp52640; ORF_ID:nsp52640.
  
 0.884
NSP_3970
Chaperone protein HtpG; Nsp3970; ORF_ID:nsp3970.
   
 0.857
alaS
Alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
  0.845
NSP_14990
WD-40 repeat protein; Nsp14990; ORF_ID:nsp14990.
   
  0.840
NSP_15730
Pentapeptide repeat; Nsp15730; ORF_ID:nsp15730.
   
  0.840
NSP_34990
Chemotaxis protein methyltransferase CheR; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
   
 0.828
NSP_45300
Two-component hybrid sensor and regulator; Nsp45300; ORF_ID:nsp45300.
  
 
 0.724
NSP_33190
Circadian input kinase A; Nsp33190; ORF_ID:nsp33190.
    
 0.714
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.712
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.