STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSP_45250Hypothetical protein; Nsp45250; ORF_ID:nsp45250. (125 aa)    
Predicted Functional Partners:
rpoB
DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.994
NSP_10410
Hypothetical protein; Nsp10410; ORF_ID:nsp10410.
  
 
 0.993
NSP_17890
DNA-directed RNA polymerase omega subunit; Nsp17890; ORF_ID:nsp17890.
    
 0.993
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.993
NSP_2310
DNA-repair protein; Nsp2310; ORF_ID:nsp2310.
   
 0.976
NSP_25940
DEAD/DEAH box helicase-like protein; Nsp25940; ORF_ID:nsp25940.
   
 0.976
NSP_28150
Type III restriction enzyme, res subunit; Nsp28150; ORF_ID:nsp28150.
   
 0.976
NSP_28160
Type III restriction enzyme, res subunit; Nsp28160; ORF_ID:nsp28160.
   
 0.976
NSP_37300
DNA helicase (Rad25-like); Nsp37300; ORF_ID:nsp37300.
   
 0.976
NSP_52270
WD40 repeat protein; Nsp52270; ORF_ID:nsp52270.
  
 
  0.868
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
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