STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSP_47420Rhomboid-like protein; Nsp47420; ORF_ID:nsp47420. (204 aa)    
Predicted Functional Partners:
tatA
Twin-arginine translocation protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
  
 
 0.778
tatA-2
Twin-arginine translocation protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.748
NSP_23530
Prohibitin-like protein; Nsp23530; ORF_ID:nsp23530.
   
 0.739
NSP_34450
Putative stomatin/prohibitin-family membrane protease subunit YbbK; Nsp34450; ORF_ID:nsp34450.
   
 0.739
NSP_43940
Membrane protease subunits, stomatin/prohibitin-like protein; Nsp43940; ORF_ID:nsp43940.
   
 0.739
NSP_44400
Putative stomatin/prohibitin-family membrane protease subunit YbbK; Nsp44400; ORF_ID:nsp44400.
   
 0.739
NSP_18730
N-acetylmuramoyl-L-alanine amidase; Nsp18730; ORF_ID:nsp18730.
    
   0.703
NSP_18740
N-acetylmuramoyl-L-alanine amidase; Nsp18740; ORF_ID:nsp18740.
    
   0.703
NSP_39910
N-acetylmuramoyl-L-alanine amidase; Nsp39910; ORF_ID:nsp39910.
    
   0.703
NSP_49030
N-acetylmuramoyl-L-alanine amidase; Nsp49030; ORF_ID:nsp49030.
    
   0.703
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.