STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSP_4940Hypothetical protein; Nsp4940; ORF_ID:nsp4940. (130 aa)    
Predicted Functional Partners:
NSP_17890
DNA-directed RNA polymerase omega subunit; Nsp17890; ORF_ID:nsp17890.
   
 
  0.751
rpoC1
DNA-directed RNA polymerase gamma subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.698
rpoC2
DNA-directed RNA polymerase delta (beta'') subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC2 subfamily.
    
  0.698
NSP_28610
Pyruvate-flavodoxin oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.
    
   0.603
NSP_2310
DNA-repair protein; Nsp2310; ORF_ID:nsp2310.
    
  0.570
NSP_25940
DEAD/DEAH box helicase-like protein; Nsp25940; ORF_ID:nsp25940.
    
  0.570
NSP_28150
Type III restriction enzyme, res subunit; Nsp28150; ORF_ID:nsp28150.
    
  0.570
NSP_28160
Type III restriction enzyme, res subunit; Nsp28160; ORF_ID:nsp28160.
    
  0.570
NSP_37300
DNA helicase (Rad25-like); Nsp37300; ORF_ID:nsp37300.
    
  0.570
NSP_4930
Serine/threonine kinase; Nsp4930; ORF_ID:nsp4930.
 
     0.536
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.