STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NSP_49450ABC transporter ATP-binding protein; Nsp49450; ORF_ID:nsp49450. (594 aa)    
Predicted Functional Partners:
NSP_49460
GUN4-like protein; Nsp49460; ORF_ID:nsp49460.
 
     0.792
NSP_49440
Integrase; Nsp49440; ORF_ID:nsp49440.
       0.718
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
    
   0.642
NSP_21020
Metallothionein; Nsp21020; ORF_ID:nsp21020.
      
 0.613
lexA
SOS-response repressor and protease LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
      
 0.613
NSP_30200
Hypothetical protein; Nsp30200; ORF_ID:nsp30200.
  
  
  0.606
NSP_30190
AAA family ATPase; Nsp30190; ORF_ID:nsp30190.
  
  
  0.552
NSP_15490
Cell division control protein CDC48-like protein; Nsp15490; ORF_ID:nsp15490; Belongs to the AAA ATPase family.
  
  
  0.523
NSP_30930
ATPase of the AAA+ family protein; Nsp30930; ORF_ID:nsp30930.
  
  
  0.521
NSP_49430
Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Nsp49430; ORF_ID:nsp49430.
       0.473
Your Current Organism:
Nodularia spumigena
NCBI taxonomy Id: 313624
Other names: N. spumigena CCY9414, Nodularia spumigena CCY9414
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